So, I did some work on the stove today to get it ready. I test fit the piping and zeroed the manometer and added some fluid to it. I did not reinstall the draft inducer because it requires 12" from the stove and since I added a second 45º elbow to get it to line up I was only left with roughly 6" from the stove. I did hook the manometer up to the pipe just to see if the unlined chimney was drawing without a fire and got .01" Wc so I guess that's a good sign.
I opened the hopper door and this is what I discovered:

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Can't really tell from this picture but it's covered in surface rust/scale and it's very, very flaky.

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In this picture you can see where there is a gap between the surface rust/scale and the actual door. There is an air gap all across the door. I noticed the door doing this the end of the 2010/2011 season but this season it seems to be worse. I have four tubs of Damp Rid that gets changed every so often all the doors are closed and there is a cap on the stove outlet.
The hopper door seems to be the only part of the stove that seems to be rusting like this.